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Acknowledgements

We would like to thank the members of the Abramovitch Lab for helpful discussions and critical assessment/bug identification within the workflow. We would also like to thank the developers and contributors of Python, Trimmomatic, FastQC, Bowtie, HTSeq, and edgeR; without these individuals, SPARTA would not be possible. Finally, we would like to thank you, the user, for utilizing the workflow and making it better.